Characterizing phylogenetically decisive taxon coverage
نویسندگان
چکیده
منابع مشابه
Characterizing phylogenetically decisive taxon coverage
Increasingly, biologists are constructing evolutionary trees on large numbers of overlapping sets of taxa, and then combining them into a ‘supertree’ that classifies all the taxa. In this paper, we ask how much coverage of the total set of taxa is required by these subsets in order to ensure that we have enough information to reconstruct the supertree uniquely. We describe two results — a combi...
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In a recent study, Steel and Sanderson defined and characterized phylogenetically decisive sets of taxon sets. A set is called phylogenetically decisive if regardless of the trees chosen for each of its taxon sets, as long as these trees are compatible with one another, their supertree is always unique. This implies that the sampled taxon sets always lead to a unique supertree, regardless what ...
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The amount of phylogenetically informative sequence data in GenBank is growing at an exponential rate, and large phylogenetic trees are increasingly used in research. Tools are needed to construct phylogenetic sequence matrices from GenBank data and evaluate the effect of missing data. Supermatrix Constructor (SUMAC) is a tool to data-mine GenBank, construct phylogenetic supermatrices, and asse...
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ژورنال
عنوان ژورنال: Applied Mathematics Letters
سال: 2010
ISSN: 0893-9659
DOI: 10.1016/j.aml.2009.08.009